User contributions for Twang9
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10 August 2022
- 18:0218:02, 10 August 2022 diff hist +52 Faq No edit summary
- 18:0118:01, 10 August 2022 diff hist +59 User guide No edit summary
- 18:0018:00, 10 August 2022 diff hist +13 User guide No edit summary
- 17:5817:58, 10 August 2022 diff hist +104 User guide No edit summary
- 17:5617:56, 10 August 2022 diff hist +385 User guide No edit summary
- 17:5617:56, 10 August 2022 diff hist +22 N File:CheatSheet V07 jgk1 hk1.pdf No edit summary current
9 August 2022
- 22:4622:46, 9 August 2022 diff hist +6 Quick start →Creating a BCO on Galaxy current
- 22:3522:35, 9 August 2022 diff hist +14 Best practices →BioCompute Registry current
- 22:3022:30, 9 August 2022 diff hist +14 Bco-domains →BCO domains
- 22:2722:27, 9 August 2022 diff hist +14 About →What is BioCompute?
- 22:2522:25, 9 August 2022 diff hist +14 Sop →BCO IDs and Versioning
- 22:1922:19, 9 August 2022 diff hist +17 N Bco faq Twang9 moved page Bco faq to Faq: match https://docs.biocomputeobject.org/faq/ current Tag: New redirect
- 22:1922:19, 9 August 2022 diff hist 0 m Faq Twang9 moved page Bco faq to Faq: match https://docs.biocomputeobject.org/faq/
- 22:1922:19, 9 August 2022 diff hist −816 Main Page No edit summary
8 August 2022
- 17:4117:41, 8 August 2022 diff hist +562 Main Page No edit summary
- 17:3817:38, 8 August 2022 diff hist +413 Main Page No edit summary
- 16:2716:27, 8 August 2022 diff hist +1,121 Main Page No edit summary
- 16:1516:15, 8 August 2022 diff hist −6,849 Main Page No edit summary
- 16:0816:08, 8 August 2022 diff hist +7,746 N User guide Created page with "== Table of contents == *Galaxy BioCompute Objects *Introduction to BioCompute Objects *BCO domains **Top-level fields **Provenance domain **Usability domain **Extension Domain ***FHIR extension ***SCM extension **Description domain **Execution domain **Parametr..."
- 15:3915:39, 8 August 2022 diff hist +485 Main Page No edit summary
- 15:2715:27, 8 August 2022 diff hist +63 Main Page No edit summary
- 15:2415:24, 8 August 2022 diff hist +734 Main Page No edit summary
- 15:1915:19, 8 August 2022 diff hist +66 N New Tools for Building BioCompute Objects on DNAnexus, Seven Bridges, and Galaxy for deposit to the FDA's BioComputeDB Created page with "800px|thumb|center" current
- 15:1915:19, 8 August 2022 diff hist +23 N File:Screen Shot 2022-08-08 at 11.18.48.png No edit summary current
- 14:2114:21, 8 August 2022 diff hist +1,027 Main Page No edit summary
5 August 2022
- 19:0219:02, 5 August 2022 diff hist +44 Main Page →Appendix-I: BCO expanded view example
- 15:5715:57, 5 August 2022 diff hist +3,705 About No edit summary
- 15:4915:49, 5 August 2022 diff hist +2,403 About →What is BioCompute?
- 15:4315:43, 5 August 2022 diff hist +29 About →What is BioCompute?
- 15:3915:39, 5 August 2022 diff hist −907 Events →Table of contents current
- 15:3815:38, 5 August 2022 diff hist +1,815 Events No edit summary
- 15:3515:35, 5 August 2022 diff hist +2,952 Events No edit summary
- 15:1215:12, 5 August 2022 diff hist +6,975 N Events Created page with "Welcome! This is the BioCompute Events page. Workshops are listed on the schedule below. For any questions, comments, or for a BioCompute Informational Session (15 minute WebEx) click here == Table of contents == *BioCompute Database and Transfer Mechanism Development Workshop *BioCompute Objects on High-performance Integrated Virtual Environment (HIVE) *Workflow Preservation and Reproducibility with BCO-RO *Towards Interoperability: Generating BioCompute Objects on Clo..."
4 August 2022
- 21:4921:49, 4 August 2022 diff hist +1,351 N About Created page with "== What is BioCompute? == Tremendous insights can be found in genome data, and many of these insights are being used to drive personalized medicine. But the hundreds of millions of reads that come from a gene sequencer represent small, nearly random fragments of the genome that’s being sequenced, and there are countless ways in which that data can be transformed to yield insights into cancer, ancestry, microbiome dynamics, metagenomics, and many other areas of interes..."
- 21:2621:26, 4 August 2022 diff hist +9 N File:Milestone for BCO.png No edit summary current
- 21:2021:20, 4 August 2022 diff hist +12 N File:Wifi analogy.png No edit summary current
- 21:1921:19, 4 August 2022 diff hist +14 N File:About.3.png No edit summary current
- 21:0821:08, 4 August 2022 diff hist +4,516 N Sop Created page with "= BCO Curation SOP = Intended audience: authors and developers The following recommendations are intended to provide guidance on BCO™ creation, versioning, certification, and authentication. == BCO IDs and Versioning == Intended Audience: BCO authors *BioCompute IDs are used as persistent URLs. A novel usability domain must result in the creation of a new BCO with a new BCO ID. BCO IDs are immutable upon creation and are never deleted or retired. If the usability..."
- 21:0421:04, 4 August 2022 diff hist +26 N File:Certification requirements.png No edit summary current
- 17:3917:39, 4 August 2022 diff hist +316 Main Page →Table of contents
- 17:3717:37, 4 August 2022 diff hist +1,819 N Extension-scm Created page with "Back to BCO domains == Extension to External References: Software Configuration Management (SCM) == The external references '''example''' extension to a SCM repository demonstrates how a BioCompute Object software source code can be stored/deposited/downloaded. The BCO would contain links to the SCM repository where the information is stored and easily retrieved. The links to the SCM can be added to the usability domain as well. "extension_domain":{..." current
- 17:3217:32, 4 August 2022 diff hist +2,649 N Extension-fhir Created page with "Back to BCO domains == Extension to External References: SMART on FHIR Genomics == The external references example extension to FHIR resource demonstrates how specific data elements can be extracted from EHR systems or other secure FHIR endpoints via technologies such as SMART on FHIR Genomics (https://www.ncbi.nlm.nih.gov/pubmed/26198304) without compromising patient and providers’ information. This is because the portions being transferred contain n..." current
- 17:2517:25, 4 August 2022 diff hist +7 Quick start →Creating a BCO on Galaxy
- 17:1917:19, 4 August 2022 diff hist +1,098 N Quick start Created page with "== '''Creating a BCO on Galaxy''' == Galaxy has an extensive workflow system. They define a [https://galaxyproject.org/learn/advanced-workflow/ workflow] as “.. a series of tools and dataset actions that run in sequence as a batch operation”. An instance of a Galaxy workflow is known as an “invocation”. Since a BCO is a record of a specific instance of computation, the Galaxy invocations are used to generate the Galaxy BCOs. The first step in creating a well-doc..."
- 17:1817:18, 4 August 2022 diff hist +45 N File:Workflow.png No edit summary current
- 17:1517:15, 4 August 2022 diff hist +376 Main Page →BioCompute Object (BCO) User Guide
- 17:0417:04, 4 August 2022 diff hist −21 Main Page →BioCompute Object (BCO) User Guide
- 17:0417:04, 4 August 2022 diff hist −39 Main Page →Introduction
- 17:0317:03, 4 August 2022 diff hist +10,198 N Introduction Created page with "== Introduction to BioCompute Objects == BioCompute is a paradigm and a BioCompute Object (BCO) is an instance of that paradigm. High-throughput sequencing (HTS), also referred to as next-generation sequencing (NGS) or massively parallel sequencing (MPS), has increased the pace at which we generate, compute and share genomic data in biomedical sciences. As a result, scientists, clinicians and regulators are now faced with a new data paradigm that is less portable, more..." current
