Main Page: Difference between revisions
No edit summary |
|||
| Line 51: | Line 51: | ||
</div> | </div> | ||
</div> | </div> | ||
</div> | |||
</div> | |||
<div id="ggw_row3" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"> | |||
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;"> | |||
<h3>[[Workshop]]</h3> | |||
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;"> | |||
We are hosting an in-person workshop on May 10, 2024. Learn more [[BioCompute Spring Workshop 2024|here]]. | |||
For all previous workshop materials, click [https://hive.biochemistry.gwu.edu/publications#Multimedia here]. | |||
</div> | </div> | ||
</div> | </div> | ||
| Line 68: | Line 77: | ||
<div id="ggw_row3" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"> | <div id="ggw_row3" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"> | ||
<div style="flex: 1; margin: 5px; min-width: | <div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;"> | ||
<h3>[[Publications|Publication]]</h3> | <h3>[[Publications|Publication]]</h3> | ||
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;"> | <div style="border-top: 1px solid #CCC; padding-top: 0.5em;"> | ||
| Line 75: | Line 84: | ||
See also full list of [[publications]] about BioCompute Object. | See also full list of [[publications]] about BioCompute Object. | ||
== Other links == | === Other links === | ||
# [[CDISC]] | # [[CDISC]] | ||
# [[Galaxy]] | # [[Galaxy]] | ||
| Line 81: | Line 90: | ||
# [[CWL|Common Workflow Language (CWL)]] | # [[CWL|Common Workflow Language (CWL)]] | ||
# [https://fairsharing.org/4293 FAIRsharing] | # [https://fairsharing.org/4293 FAIRsharing] | ||
</div> | |||
</div> | |||
Revision as of 15:57, 7 November 2023
BioCompute Object (BCO) User Guide
This document specifies the structure of BioCompute Objects. The specification is split into multiple parts linked to this top-level document and is maintained in a GitHub repository where contributions are welcome. This document was created by the BioCompute Object Consortium members (BCOC).
It is offered as support for IEEE-2791-2020: IEEE Standard for Bioinformatics Computations and Analyses Generated by High-Throughput Sequencing (HTS) to Facilitate Communication.
Read more: Introduction to BioCompute Objects
Frequently Asked Questions
The FAQ section contains a list of questions asked by users regarding using the portal, pipeline steps, and extensions as well as questions related to the prerequisite, knowledgebase recommendation, and saving and publishing BCOs.
Read more: Frequently Asked Questions
BCO Curation SOP
Intended audience: authors and developers
This section is intended to provide guidance on BCO™ creation, versioning, certification and authentication.
Read more: BCO Curation SOP
About
A BioCompute Object (BCO) is an instance of the BioCompute standard and is a computational record of a bioinformatics pipeline. A BCO is not an analysis but is a record of which analyses were executed and in exactly which ways. In this way, a BCO acts as an interface for existing standards. A BCO contains all of the necessary information to repeat an entire pipeline from FASTQ to result and includes additional metadata to identify provenance and usage.
Read more:
Publication
For Citation Purpose: Simonyan, V., Goecks, J., & Mazumder, R. (2017). Biocompute Objects — A Step towards Evaluation and Validation of Biomedical Scientific Computations. PDA Journal of Pharmaceutical Science and Technology, 71(2), 136–146. doi: 10.5731/pdajpst.2016.006734
See also full list of publications about BioCompute Object.