User contributions for Lorikrammer
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14 April 2026
- 21:3021:30, 14 April 2026 diff hist 0 m Tutorials No edit summary current
- 21:3021:30, 14 April 2026 diff hist +1,509 N Account Registration Created page with "==Account Registration== Before building a BioCompute Object (BCO), please register an account first by following the listed steps: # Go to '''Log in''' on the header:center|thumb|804x804px #For first-time users, please click on “'''Don’t have an account? Sign up'''”, fill out the required information and click '''SUBMIT'''. thumb|centerGoogle authentication is also enabled on BioCompute. Users c..." current
- 21:2921:29, 14 April 2026 diff hist 0 m Main Page No edit summary
- 21:2821:28, 14 April 2026 diff hist 0 m Main Page No edit summary
- 21:2821:28, 14 April 2026 diff hist +5,623 N User Guide Created page with "'''Go Back to BioCompute Objects.''' == Quick Links == *BioCompute Cheat Sheet *Introduction to BioCompute Objects *BCO Domains *General User Tutorial *[https://standards.ieee.org/ieee/2791/7337/ IEEE-2791-2020: IEEE Standard for Bioinformatics Computations and Analyses Generated by High-Throughput Sequencing (HTS) to Facilitate Communication] *BCO Portal Local Deployment|API Tutorial: BCO Portal Local De..."
- 21:2721:27, 14 April 2026 diff hist −10 m BCO Domains →Top Level Fields current
- 21:2621:26, 14 April 2026 diff hist +3,543 N Top Level Fields Created page with "'''Go back to BCO Domains.''' == Top Level Fields == These header fields uniquely define this BCO. These fields are required for every BCO and are represented at the top level object. Condensed example: { "object_id": "https://example.com/BCO_948701/1.0", "spec_version" : "https://w3id.org/ieee/ieee-2791-schema/2791object.json", "etag": "d41d8cd98f00b204e9800998ecf8427e", "provenance_domain": {..." current
- 21:2421:24, 14 April 2026 diff hist 0 m BCO Domains →Error Domain (error_domain)
- 21:2321:23, 14 April 2026 diff hist 0 m FAQs No edit summary current
- 21:2321:23, 14 April 2026 diff hist +3,335 N Error Domain Created page with "'''Go back to BCO Domains.''' == Error Domain (''error_domain)'' == This section, also known as the ''acceptable range of variability'', is an optional domain comprised of two subdomains: empirical and algorithmic. The error domain IEEE schema and definition can be found [https://opensource.ieee.org/2791-object/ieee-2791-schema/-/blob/master/error_domain.json here]. The possible keys within each subdomain are workflow-specific, human-readable free text. For data i..." current
- 21:2221:22, 14 April 2026 diff hist 0 m BCO Domains →Parametric Domain (parametric_domain)
- 21:2221:22, 14 April 2026 diff hist +1,424 N Parametric Domain Created page with "'''Go back to BCO Domains.''' == Parametric Domain (parametric_domain) == This optional domain represents the list of parameters customizing the computational flow which can affect the output of the calculations. These fields can be custom to each kind of analysis and are tied to a particular pipeline implementation. The provenance domain IEEE schema and definition can be found [https://opensource.ieee.org/2791-object/ieee-2791-schema/-/blob/master/parametric_domai..." current
- 21:2121:21, 14 April 2026 diff hist 0 m BCO Domains →Execution Domain (execution_domain)
- 21:2021:20, 14 April 2026 diff hist 0 m SOP →Extension domain current
- 21:2021:20, 14 April 2026 diff hist −17 m SOP →Domain-specific guidance
- 21:1921:19, 14 April 2026 diff hist +7,419 N Execution Domain Created page with "'''Go back to BCO Domains.''' == Execution Domain (''execution_domain'') == This section defines the ''execution_domain'' part of the BCO. The execution domain IEEE schema, and definition can be found [https://opensource.ieee.org/2791-object/ieee-2791-schema/-/blob/master/execution_domain.json here]. The fields required for the execution of the BCO have been encapsulated together in order to clearly separate information needed for deployment, softwa..." current
- 21:1821:18, 14 April 2026 diff hist 0 m BCO Domains →Description Domain (description_domain)
- 21:1721:17, 14 April 2026 diff hist +9,628 N Description Domain Created page with "'''Go back to BCO Domains.''' == Description Domain (''description_domain'') == This section defines the fields of the ''description_domain'' part of the BCO structure. The description domain IEEE schema and definition can be found [https://opensource.ieee.org/2791-object/ieee-2791-schema/-/blob/master/description_domain.json here]. Structured field for description of external references, the pipeline steps, and the relationship of I/O objects. Info..." current
- 21:1721:17, 14 April 2026 diff hist 0 m BCO Domains →Extension Domain (extension_domain)
- 21:1621:16, 14 April 2026 diff hist +2,921 N Extension Domain Created page with "'''Go back to BCO Domains.''' == Extension Domain ''(extension_domain)'' == The ''extension_domain'' is a space for a user to add additional structured information that is not defined in the BioCompute schema. It is '''optional'''. While the extension domain is not defined by IEEE-2791-2020, each extension in this domain must provide a reference to the schema that defines it in order to validate. The extension domain allows a user to define additional fields and is..."
- 21:1521:15, 14 April 2026 diff hist 0 m BCO Domains →Usability Domain (usability_domain)
- 21:1421:14, 14 April 2026 diff hist −46 m FAQs No edit summary
- 21:1321:13, 14 April 2026 diff hist +4,768 N Usability Domain Created page with "'''Go back to BCO Domains.''' == Usability Domain ''(usability_domain)'' == This section defines the ''usability_domain'' part of the BCO structure. The associated IEEE schema that contains the definition can be found [https://opensource.ieee.org/2791-object/ieee-2791-schema/-/blob/master/usability_domain.json here]. The usability domain provides a specific scientific use case and a description of the function of the BCO. Condensed example: <pre>..." current
- 21:1121:11, 14 April 2026 diff hist −4 m Tutorials No edit summary
- 21:1121:11, 14 April 2026 diff hist +1 m Main Page No edit summary
- 21:1021:10, 14 April 2026 diff hist +2 m Main Page No edit summary
- 21:0821:08, 14 April 2026 diff hist −304 m Build a BCO No edit summary
- 21:0521:05, 14 April 2026 diff hist −10 m Tutorials No edit summary
- 21:0521:05, 14 April 2026 diff hist +2,506 N Build a BCO Created page with " #Click on '''BCO Builder''' icon on the Navigation Bar:center|thumb|1056x1056px #To begin filling out the BCO, click on '''Provenance Domain''' to expand the section. Fill out the information as needed. Red boxes are required fields, and plain boxes are optional fields. Click '''next''' to advancing to the next section.center|thumb|1054x1054px #For information to fill out each domain, please refer to these links: Provenance-domain|Pro..."
- 21:0221:02, 14 April 2026 diff hist +35 m BCO Domains →Provenance Domain (''provenance_domain'') Tag: Visual edit
- 21:0121:01, 14 April 2026 diff hist −18 m BCO Domains →Provenance Domain (provenance_domain)
- 20:5920:59, 14 April 2026 diff hist 0 m Input and Output Domain →Input and Output Domain (io_domain) current
- 20:5820:58, 14 April 2026 diff hist 0 m Provenance Domain →Provenance Domain (provenance_domain) current Tag: Visual edit
- 20:5220:52, 14 April 2026 diff hist −33 m BCO Domains →Error Domain, acceptable range of variability (error_domain) Tag: Visual edit
- 20:5020:50, 14 April 2026 diff hist −12 m Provenance Domain No edit summary
- 20:4820:48, 14 April 2026 diff hist −12 m Input and Output Domain No edit summary Tag: Visual edit
- 20:4520:45, 14 April 2026 diff hist +2,974 m BCO Domains No edit summary
- 20:4520:45, 14 April 2026 diff hist +1 N BCO Domains Created page with "a" Tag: Visual edit
3 March 2026
- 21:0821:08, 3 March 2026 diff hist +4 m Provenance Domain →Provenance Domain (provenance_domain) Tag: Visual edit
- 20:3520:35, 3 March 2026 diff hist 0 m Provenance Domain →Provenance Domain (provenance_domain) Tag: Visual edit
11 February 2026
- 19:0419:04, 11 February 2026 diff hist −57 m Best Practices →Input and Output Domain current Tag: Visual edit
10 February 2026
- 21:3421:34, 10 February 2026 diff hist −15 m Input and Output Domain →"Mediatype" Field Definition Tag: Visual edit
- 21:3021:30, 10 February 2026 diff hist +8,106 N Provenance Domain Created page with "'''Go back to BCO domains.''' == Provenance Domain (''provenance_domain'') == This section defines the fields of the provenance_domain part of the BCO structure. The provenance domain IEEE schema and definition can be found [https://opensource.ieee.org/2791-object/ieee-2791-schema/-/blob/master/provenance_domain.json here]. Condensed example: <pre> "provenance_domain": { "name": "HCV1a ledipasvir resistance SNP detection"..."
- 20:3420:34, 10 February 2026 diff hist +15 m FAQs →General Tag: Visual edit
- 20:3120:31, 10 February 2026 diff hist +7,257 N Input and Output Domain Created page with "'''Go back to BCO Domains.''' == Input and Output Domain | "io_domain" == This section defines the io_domain part of the BCO. The IEEE io domain schema can be found [https://opensource.ieee.org/2791-object/ieee-2791-schema/-/blob/master/io_domain.json here]. This represents the list of global input and output files created by the computational workflow, excluding the intermediate files. These fields are pointers to objects that can resid..."
5 February 2026
- 21:0821:08, 5 February 2026 diff hist +14,834 N HCV1a ledipasvir resistance SNP detection Created page with "<pre> { "object_id": "https://raw.githubusercontent.com/biocompute-objects/BCO_Specification/1.4.2/examples/HCV1a.json", "etag": "11ee4c3b8a04ad16dcca19a6f478c0870d3fe668ed6454096ab7165deb1ab8ea", "spec_version": "https://w3id.org/ieee/ieee-2791-schema/", "provenance_domain": { "name": "HCV1a ledipasvir resistance SNP detection", "version": "2.9", "review": [ { "status": "approved", "revi..." current
- 21:0521:05, 5 February 2026 diff hist −36 m WGS Simulation of DUF1220 Regions No edit summary current Tag: Manual revert
- 21:0521:05, 5 February 2026 diff hist +36 m WGS Simulation of DUF1220 Regions No edit summary Tag: Reverted
- 21:0321:03, 5 February 2026 diff hist −1 m WGS Simulation of DUF1220 Regions No edit summary
- 20:5620:56, 5 February 2026 diff hist +25,384 N WGS Simulation of DUF1220 Regions Created page with "<code> { "object_id": "https://biocomputeobject.org/BCO_000545/1.0", "spec_version": "https://w3id.org/ieee/ieee-2791-schema/2791object.json", "provenance_domain": { "name": "WGS Simulation of DUF1220 Regions", "version": "4.0", "license": "https://opensource.org/licenses/MIT", "created": "2020-08-30T11:30:52.000Z", "modified": "2024-11-17T14:18:09.680Z", "derived_from": "https://biocomputeobject.org/viewer?https://biocompu..."