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Combined display of all available logs of BCOeditor Wiki. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).

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  • 21:44, 14 April 2026 Lorikrammer talk contribs deleted page White paper (content was: "center|1800x1800px center|1680x1680px", and the only contributor was "Twang9" (talk))
  • 21:44, 14 April 2026 Lorikrammer talk contribs created page White Paper (Created page with "center|1800x1800px center|1680x1680px")
  • 21:43, 14 April 2026 Lorikrammer talk contribs deleted page Sop (content was: "#REDIRECT SOP", and the only contributor was "Twang9" (talk))
  • 21:42, 14 April 2026 Lorikrammer talk contribs deleted page Quick start (content was: "== '''Creating a BCO on Galaxy''' == Galaxy has an extensive workflow system. They define a [https://galaxyproject.org/learn/advanced-workflow/ workflow] as “.. a series of tools and dataset actions that run in sequence as a batch operation”. An instance of a Galaxy workflow is known as an “invocation”. Since a BCO is a record of a specific instance of computation, the G...", and the only contributor was "Twang9" (talk))
  • 21:41, 14 April 2026 Lorikrammer talk contribs created page Creating a BCO on Galaxy (Created page with "== '''Creating a BCO on Galaxy''' == Galaxy has an extensive workflow system. They define a [https://galaxyproject.org/learn/advanced-workflow/ workflow] as “.. a series of tools and dataset actions that run in sequence as a batch operation”. An instance of a Galaxy workflow is known as an “invocation”. Since a BCO is a record of a specific instance of computation, the Galaxy invocations are used to generate the Galaxy BCOs. The first step in creating a well-doc...")
  • 21:39, 14 April 2026 Lorikrammer talk contribs deleted page Publication (content was: "#REDIRECT Publications", and the only contributor was "Soiland-Reyes" (talk))
  • 21:38, 14 April 2026 Lorikrammer talk contribs deleted page Galaxy workflow converter (content was: "Workflows can be directly downloaded from Galaxy but file conversion is needed in order to transfer into BCODB successfully. Please follow the following steps to convert the file and validation: == File conversion == # Download the converter [https://github.com/FDA-ARGOS/data.argosdb/blob/main/lib/galaxy%20converter.py script] from GitHub. # On the local terminal, run the followi...", and the only contributor was "Twang9" (talk))
  • 21:38, 14 April 2026 Lorikrammer talk contribs created page Galaxy Workflow Converter (Created page with "Workflows can be directly downloaded from Galaxy but file conversion is needed in order to transfer into BCODB successfully. Please follow the following steps to convert the file and validation: == File conversion == # Download the converter [https://github.com/FDA-ARGOS/data.argosdb/blob/main/lib/galaxy%20converter.py script] from GitHub. # On the local terminal, run the following command <code>python [converter script's name.py] -b [path to the file that needs to be co...")
  • 21:38, 14 April 2026 Lorikrammer talk contribs deleted page External-references (content was: "'''Go back to BCO Domains.''' == 3.2 Appendix-II: External reference database list == This list contains the databases that are currently being used in our BCOs. We use the CURIEs that map to URIs maintained by http://identifiers.org/ Identifiers.org is an established resolving system that enables the referencing of data for the scientific community, with a current focus on the Life Sciences domain. Identifiers.org provides direct access to the identified data using o...")
  • 21:38, 14 April 2026 Lorikrammer talk contribs created page External References (Created page with "'''Go back to BCO Domains.''' == 3.2 Appendix-II: External reference database list == This list contains the databases that are currently being used in our BCOs. We use the CURIEs that map to URIs maintained by http://identifiers.org/ Identifiers.org is an established resolving system that enables the referencing of data for the scientific community, with a current focus on the Life Sciences domain. Identifiers.org provides direct access to the identified data...")
  • 21:37, 14 April 2026 Lorikrammer talk contribs deleted page Extension-scm (content was: "'''Go back to BCO Domains.''' == Extension to External References: Software Configuration Management (SCM) == The external references '''example''' extension to a SCM repository demonstrates how a BioCompute Object software source code can be stored/deposited/downloaded. The BCO would contain links to the SCM repository where the information is stored and easily retrieved. The links to the SCM can be added to the usability domain as well. "extension_domain":{...")
  • 21:36, 14 April 2026 Lorikrammer talk contribs created page SCM Extension (Created page with "'''Go back to BCO Domains.''' == Extension to External References: Software Configuration Management (SCM) == The external references '''example''' extension to a SCM repository demonstrates how a BioCompute Object software source code can be stored/deposited/downloaded. The BCO would contain links to the SCM repository where the information is stored and easily retrieved. The links to the SCM can be added to the usability domain as well. "extension_domain":{...")
  • 21:36, 14 April 2026 Lorikrammer talk contribs deleted page Extension-fhir (content was: "'''Go back to BCO Domains.''' == Extension to External References: SMART on FHIR Genomics == The external references example extension to FHIR resource demonstrates how specific data elements can be extracted from EHR systems or other secure FHIR endpoints via technologies such as SMART on FHIR Genomics (https://www.ncbi.nlm.nih.gov/pubmed/26198304) without compromising patient and providers’ information. This is because the portions being transferred contain no identif...")
  • 21:35, 14 April 2026 Lorikrammer talk contribs created page FHIR Extension (Created page with "'''Go back to BCO Domains.''' == Extension to External References: SMART on FHIR Genomics == The external references example extension to FHIR resource demonstrates how specific data elements can be extracted from EHR systems or other secure FHIR endpoints via technologies such as SMART on FHIR Genomics (https://www.ncbi.nlm.nih.gov/pubmed/26198304) without compromising patient and providers’ information. This is because the portions being transferred contain no...")
  • 21:34, 14 April 2026 Lorikrammer talk contribs deleted page Contact us (content was: "Go back to Prefix Registration The best way to get help for any issues is go to '''Contact Us''' on the bottom of the BioCompute web page for a quick response and '''Report Bug or request feature''' for a less immediate problem.800px|thumb|center ''<u><big>'''Note a few suggested key points to include in a message:'''</big></u>'' *Issue location and ID if possible (e.g. provide a specific draft URL:https://www.biocomputeobject.org/builder/https/bioco...")
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