BCO Resources: Difference between revisions

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         <h3>[https://biocomputeobject.org/api/docs/ BCODB API]</h3>[[File:Swagger.png|frameless|211x211px]]<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
         <h3>[https://github.com/biocompute-objects/bcotool/tree/1.1.0 BCO-TOOL]</h3>[[File:Octocat.png|frameless|96x96px]]<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
Explore the BioCompute database RESTful APIs, generated by Swagger.
Command line tool for to create, validate, and export BioCompute Objects.
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         <h3>[https://github.com/nextflow-io/nf-prov Nextflow]</h3>[[File:Nextflow.png|frameless|121x121px]]<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
         <h3>[https://cran.r-project.org/web/packages/biocompute/index.html CRAN BioCompute Tool]</h3>[[File:Cran.png|frameless|71x71px]]<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
Automatically generate BCO from Nextflow pipelines with provenance information
Tools to create, validate, and export BioCompute Objects in R. Users can encode information in data frames, and compose BioCompute Objects from the domains defined by the standard.
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<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;">
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[https://hive.biochemistry.gwu.edu/dna.cgi?cmd=main HIVE Platform]
=== [https://hub.docker.com/r/dnanexus/bconexus BCO Nexus] ===
 
[[File:Dnanexus.png|frameless|60x60px]][[File:Velsera.jpg|frameless|127x127px]]<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
[[File:Hive.png|frameless|155x155px]]<div style="border-top: 1px solid #CCC; padding-top: 0.5em;">
BCOnexus developed by DNAnexus, now known as Velsera, as a platform-free Docker tool for quick BCO evaluation.
The High-throughput Integrated Virtual Environment (HIVE) for genome analysis has platform specific tools for generating BioCompute Objects from workflows.
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Revision as of 15:30, 11 March 2025

BCODB API

Swagger.png

Explore the BioCompute database RESTful APIs, generated by Swagger.

Nextflow

Nextflow.png

Automatically generate BCO from Nextflow pipelines with provenance information

HIVE Platform

Hive.png

The High-throughput Integrated Virtual Environment (HIVE) for genome analysis has platform specific tools for generating BioCompute Objects from workflows.

BCO-TOOL

Octocat.png

Command line tool for to create, validate, and export BioCompute Objects.

CRAN BioCompute Tool

Cran.png

Tools to create, validate, and export BioCompute Objects in R. Users can encode information in data frames, and compose BioCompute Objects from the domains defined by the standard.

BCO Nexus

Dnanexus.pngVelsera.jpg

BCOnexus developed by DNAnexus, now known as Velsera, as a platform-free Docker tool for quick BCO evaluation.

Workshop

We hosted an in-person workshop on May 10, 2024. Learn more here. For all previous workshop materials, click here.