Creating a BCO on Galaxy: Difference between revisions
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Lorikrammer (talk | contribs) (Created page with "== '''Creating a BCO on Galaxy''' == Galaxy has an extensive workflow system. They define a [https://galaxyproject.org/learn/advanced-workflow/ workflow] as “.. a series of tools and dataset actions that run in sequence as a batch operation”. An instance of a Galaxy workflow is known as an “invocation”. Since a BCO is a record of a specific instance of computation, the Galaxy invocations are used to generate the Galaxy BCOs. The first step in creating a well-doc...") |
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== '''Creating a BCO on Galaxy''' == | == '''Creating a BCO on Galaxy''' == | ||
Galaxy has an extensive workflow system. They define a [https://galaxyproject.org/learn/advanced-workflow/ workflow] as “.. a series of tools and dataset actions that run in sequence as a batch operation”. An instance of a Galaxy workflow is known as an “invocation”. Since a BCO is a record of a specific instance of computation, the Galaxy invocations are used to generate the Galaxy BCOs | Galaxy has an extensive workflow system. They define a [https://galaxyproject.org/learn/advanced-workflow/ workflow] as “.. a series of tools and dataset actions that run in sequence as a batch operation”. An instance of a Galaxy workflow is known as an “invocation”. Since a BCO is a record of a specific instance of computation, the Galaxy invocations are used to generate the Galaxy BCOs. | ||
Proper annotation of the workflow is required BEFORE running it. | Proper annotation of the workflow is required BEFORE running it. | ||
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*The workflow Annotation block: Becomes the FIRST entry in the BCO Usability Domain | *The workflow Annotation block: Becomes the FIRST entry in the BCO Usability Domain | ||
**The annotation from the history (if included) becomes the second entry in the BCO Usability Domain | **The annotation from the history (if included) becomes the second entry in the BCO Usability Domain | ||
[[File:Workflow.png|800px|thumb|center]] | [[File:Workflow.png|800px|thumb|center]] | ||
Latest revision as of 21:41, 14 April 2026
Creating a BCO on Galaxy
Galaxy has an extensive workflow system. They define a workflow as “.. a series of tools and dataset actions that run in sequence as a batch operation”. An instance of a Galaxy workflow is known as an “invocation”. Since a BCO is a record of a specific instance of computation, the Galaxy invocations are used to generate the Galaxy BCOs.
Proper annotation of the workflow is required BEFORE running it.
Notice the following in the example below:
- The Name of the workflow: Becomes the BCO Name
- The workflow version: Translated to a sequential digit and included as the BCO version
- The workflow Annotation block: Becomes the FIRST entry in the BCO Usability Domain
- The annotation from the history (if included) becomes the second entry in the BCO Usability Domain
